All Classes
AccessionLocalization
AminoAcid
AnnotatedSpectrum
AnySimpleTypeAdapter
AplIndexedReader
AplSpectrum
ArchiveSpectrum
AvroModification
AvroTerm
AvroTuple
BinaryPeaks
BinaryPropertyStorage
BufferedRandomAccessFile
ChronicleMapPropertyStorage
ClusteringFileCluster
ClusteringFileIndex
ClusteringFileIndexer
ClusteringFileModification
ClusteringFilePSM
ClusteringFileReader
ClusteringFileSpectrumReference
ClusteringIndexElement
CvParam
CvParam
DataProcessing
DbMutex
DbObject
DefaultSpectrum
EcachePropertyStorage
ExonInfo
GeneCoordinates
ICluster
IClusterSourceListener
IClusterSourceReader
IdentifiedModification
IIndexer
IMapStorage
IModification
IndexElement
IndexElementImpl
InMemoryPropertyStorage
IPeptideSpectrumMatch
IPropertyStorage
ISpectrumReference
ITuple
KnownProperties
LevelDBPropertyStorage
LibrarySpectrumBuilder
LongObject
Maldi
MapDBPropertyStorage
MgfIndexedReader
MgfIterableReader
MgfUtils
MgfUtils.FragmentToleranceUnits
MgfUtils.MassType
MgfUtils.PeptideToleranceUnit
MgfUtils.ReportType
MgfUtils.SearchType
ModelConstants
Ms2Query
MsInstrument
MsManufacturer
MsMassAnalyzer
MSNumpress
MspAttributeReader
MspIterableReader
MspSpectrum
MsRun
MzIterableChannelReader
MzIterableReader
MzMlIndexedReader
MzMlIndexedReader.MZML_PARAMS
MzMLSpectrum
MzReader
MzXmlElement
MzXMLIndexedReader
MzXMLIterableReader
MzXMLObject
MzXMLParsingException
MzXMLSpectrum
MzXMLUnmarshaller
MzXMLUnmarshallerFactory
NameValue
NonNegativeIntegerAdapter
ObjectDBPropertyStorage
ObjectFactory
ObjectsCache
ObjectsDB
OntologyEntry
Operator
Orientation
Param
ParentFile
Pattern
PeakMzComparator
Peaks
PgatkIOException
Plate
PrecursorMz
PrideAvroReader
PrideAvroWriter
PrideJsonIndexedReader
PrideJsonIterableReader
PrideJsonWriter
PropertyStorageFactory
Robot
Scan
ScanOrigin
Separation
SeparationTechnique
SequenceCount
SimpleSemaphore
Software
SparkeyPropertyStorage
Spectrum
SpectrumProperty
Spot
Spotting
StoredProperties
StringUtils
Triple
Tuple
UrParameter
WaitingHandler